API reference

This section contains the API reference for denoise.

denoise Modules:

• denoise.train
  • count_parameters()
  • run()
• denoise.slice
  • run()
• denoise.volume
  • run()
• denoise.model
  • unet_bottleneck_gn
    • unet_bottleneck_gn.forward()
  • unet_box_gn
    • unet_box_gn.forward()
  • unet_down
    • unet_down.forward()
  • unet_ns_gn
    • unet_ns_gn.forward()
  • unet_up
    • unet_up.forward()
• denoise.model3d
  • UNet
    • UNet.forward()
    • UNet.forward_gradcp()
    • UNet.weight_init()
  • unet3d()
• denoise.data
  • PatchIndex
    • PatchIndex.d_idx
    • PatchIndex.left
    • PatchIndex.top
  • TilingMeta
    • TilingMeta.D
    • TilingMeta.H_in
    • TilingMeta.H_pad
    • TilingMeta.P_per_slice
    • TilingMeta.W_in
    • TilingMeta.W_pad
    • TilingMeta.edge_mode
    • TilingMeta.n_cols
    • TilingMeta.n_rows
    • TilingMeta.neighbors
    • TilingMeta.pad_bottom
    • TilingMeta.pad_mode
    • TilingMeta.pad_right
    • TilingMeta.ph
    • TilingMeta.pw
    • TilingMeta.stride_h
    • TilingMeta.stride_w
  • TomoDatasetInfer
    • TomoDatasetInfer.stitch_predictions()
  • TomoDatasetTrain
  • save_normalization_value()
• denoise.data3d
  • TomoDataset3DInfer
    • TomoDataset3DInfer.stitch_predictions()
  • TomoDataset3DTrain
  • geom_transform_3d()
  • save_normalization_value_3d()
• denoise.data_utils
  • InferenceBatchSizeOptimizer
    • InferenceBatchSizeOptimizer.estimate_peak_memory()
    • InferenceBatchSizeOptimizer.find_optimal_batch_size()
    • InferenceBatchSizeOptimizer.get_available_memory()
    • InferenceBatchSizeOptimizer.profile()
  • extract_sliding_window_patches_25d()
  • stitch_sliding_window_patches()
  • stitch_sliding_window_patches_core()
• denoise.loss
  • LCL
    • LCL.forward()
  • laplacian_batch()
  • laplacian_entropy_map()
• denoise.eval
  • laplacian_batch()
  • laplacian_entropy_map()
  • laplacian_score_batch()
• denoise.registry
  • list_registry()
  • register()
  • search()
• denoise.tiffs
  • glob()
  • load_sino()
  • load_stack()
  • natural_sorted()
  • save_stack()
• denoise.utils
  • save2img()
  • save2img_rgb()
  • scale2uint8()
  • str2bool()